Loukas Petridis: search on Z-Library

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1

Quantum Calculations on Plant Cell Wall Component Interactions

Yang, Hui, Watts, Heath D., Gibilterra, Virgil, Weiss, T. Blake, Petridis, Loukas, Cosgrove, Daniel J., Kubicki, James D.

Journal:

Interdisciplinary Sciences: Computational Life Sciences

Year:

2018

Language:

english

File:

PDF, 1.76 MB

english, 2018

2

Ammonia-salt solvent promotes cellulosic biomass deconstruction under ambient pretreatment conditions to enable rapid soluble sugar production at ultra-low enzyme loadings

Chundawat, Shishir P. S., Sousa, Leonardo da Costa, Roy, Shyamal, Yang, Zhi, Gupta, Shashwat, Pal, Ramendra, Zhao, Chao, Liu, Shih-Hsien, Petridis, Loukas, O'Neill, Hugh, Pingali, Sai Venkatesh

Journal:

Green Chemistry

Year:

2020

File:

PDF, 5.13 MB

2020

3

Mechanism of lignin inhibition of enzymatic biomass deconstruction

Vermaas, Josh V., Petridis, Loukas, Qi, Xianghong, Schulz, Roland, Lindner, Benjamin, Smith, Jeremy. C.

Journal:

Biotechnology for Biofuels

Year:

2015

Language:

english

File:

PDF, 3.99 MB

english, 2015

4

Molecular-level driving forces in lignocellulosic biomass deconstruction for bioenergy

Petridis, Loukas, Smith, Jeremy C.

Journal:

Nature Reviews Chemistry

Year:

2018

Language:

english

File:

PDF, 8.98 MB

english, 2018

5

Systematic parameterization of lignin for the CHARMM force field

Vermaas, Josh V., Petridis, Loukas, Ralph, John, Crowley, Michael F., Beckham, Gregg T.

Journal:

Green Chemistry

Year:

2019

Language:

english

File:

PDF, 1.48 MB

english, 2019

6

Why genetic modification of lignin leads to low-recalcitrance biomass

Carmona, Christopher, Langan, Paul, Smith, Jeremy C., Petridis, Loukas

Journal:

Physical Chemistry Chemical Physics

Year:

2015

Language:

english

File:

PDF, 1.78 MB

english, 2015

7

Molecular Driving Forces Behind the Tetrahydrofuran-Water Miscibility Gap

Smith, Micholas Dean, Mostofian, Barmak, Petridis, Loukas, Cheng, Xiaolin, Smith, Jeremy C.

Journal:

Journal of Physical Chemistry B

Year:

2016

Language:

english

File:

PDF, 1.14 MB

english, 2016

8

Systematic Parameterization of Lignin for the Charmm Force Field

Vermaas, Josh V., Petridis, Loukas, Beckham, Gregg T., Crowley, Michael F.

Journal:

Biophysical Journal

Year:

2017

Language:

english

File:

PDF, 38 KB

english, 2017

9

Relationship between lignocellulosic biomass dissolution and physicochemical properties of ionic liquids composed of 3-methylimidazolium cations and carboxylate anions

Moyer, Preenaa, Smith, Micholas Dean, Abdoulmoumine, Nourredine, Chmely, Stephen C., Smith, Jeremy C, Petridis, Loukas, Labbe, Nicole

Journal:

Physical Chemistry Chemical Physics

Year:

2018

Language:

english

File:

PDF, 1018 KB

english, 2018

10

Cellulose-Hemicellulose Interactions at Elevated Temperatures Increase Cellulose Recalcitrance to Biological Conversion

Kumar, Rajeev, Bhagia, Samarthya, Smith, Micholas Dean, Petridis, Loukas, Ong, Rebecca, Cai, Charles M, Mittal, Ashutosh, Himmel, Michael E, Balan, Venkatesh, Dale, Bruce E, Ragauskas, Arthur, Smith,

Journal:

Green Chemistry

Year:

2018

Language:

english

File:

PDF, 2.27 MB

english, 2018

11

Temperature-dependent phase behaviour of tetrahydrofuran-water alters solubilization of xylan to improve co-production of furfurals from lignocellulosic biomass

Smith, Micholas Dean, Cai, Charles M, Cheng, Xiaolin, Petridis, Loukas, Smith, Jeremy C

Journal:

Green Chemistry

Year:

2018

Language:

english

File:

PDF, 2.04 MB

english, 2018

12

Dynamic Neutron Scattering by Biological Systems

Smith, Jeremy C., Tan, Pan, Petridis, Loukas, Hong, Liang

Journal:

Annual Review of Biophysics

Year:

2018

Language:

english

File:

PDF, 845 KB

english, 2018

13

Ammonia-salt solvent promotes cellulosic biomass deconstruction under ambient pretreatment conditions to enable rapid soluble sugar production at ultra-low enzyme loadings

Chundawat, Shishir P. S., Sousa, Leonardo da Costa, Roy, Shyamal, Yang, Zhi, Gupta, Shashwat, Pal, Ramendra, Zhao, Chao, Liu, Shih-Hsien, Petridis, Loukas, O'Neill, Hugh, Pingali, Sai Venkatesh

Journal:

Green Chemistry

Year:

2020

Language:

english

File:

PDF, 5.13 MB

english, 2020

14

Molecular simulation as a tool for studying lignin

Amandeep K. Sangha, Loukas Petridis, Jeremy C. Smith, Angela Ziebell, Jerry M. Parks

Journal:

Environmental Progress & Sustainable Energy

Year:

2012

Language:

english

File:

PDF, 151 KB

english, 2012

15

A molecular mechanics force field for lignin

Loukas Petridis, Jeremy C. Smith

Journal:

Journal of Computational Chemistry

Year:

2009

Language:

english

File:

PDF, 371 KB

english, 2009

16

Association of polymorphisms of the serotonergic system with smoking initiation in Caucasians

Maria Iordanidou, Anna Tavridou, Ioannis Petridis, Soultana Kyroglou, Loukas Kaklamanis, Dimitrios Christakidis, Vangelis G. Manolopoulos

Journal:

Drug and Alcohol Dependence

Year:

2010

Language:

english

File:

PDF, 191 KB

english, 2010

17

Scaling of Multimillion-Atom Biological Molecular Dynamics Simulation on a Petascale Supercomputer

Schulz, Roland, Lindner, Benjamin, Petridis, Loukas, Smith, Jeremy C.

Journal:

Journal of Chemical Theory and Computation

Year:

2009

Language:

english

File:

PDF, 2.29 MB

english, 2009

18

Morphological changes in the cellulose and lignin components of biomass occur at different stages during steam pretreatment

Pingali, Sai Venkatesh, O’Neill, Hugh M., Nishiyama, Yoshiharu, He, Lilin, Melnichenko, Yuri B., Urban, Volker, Petridis, Loukas, Davison, Brian, Langan, Paul

Journal:

Year:

2014

Language:

english

File:

PDF, 469 KB

english, 2014

19

Structure and dynamics of a complex of cellulose with EDA: insights into the action of amines on cellulose

Sawada, Daisuke, Nishiyama, Yoshiharu, Petridis, Loukas, Parthasarathi, R., Gnanakaran, S., Forsyth, V. Trevor, Wada, Masahisa, Langan, Paul

Journal:

Year:

2013

Language:

english

File:

PDF, 429 KB

english, 2013

20

Spatial Arrangement of Organic Compounds on a Model Mineral Surface: Implications for Soil Organic Matter Stabilization

Petridis, Loukas, Ambaye, Haile, Jagadamma, Sindhu, Kilbey, S. Michael, Lokitz, Bradley S., Lauter, Valeria, Mayes, Melanie A.

Journal:

Environmental Science & Technology

Year:

2014

Language:

english

File:

PDF, 1.08 MB

english, 2014

21

Towards a Computational Model of Lignocellulose: Molecular Simulation of Lignin

Petridis, Loukas, Smith, Jeremy C.

Journal:

Biophysical Journal

Year:

2010

Language:

english

File:

PDF, 37 KB

english, 2010

22

Neutron reflectometry reveals the internal structure of organic compounds deposited on aluminum oxide

Mayes, Melanie, Jagadamma, Sindhu, Ambaye, Haile, Petridis, Loukas, Lauter, Valeria

Journal:

Year:

2013

Language:

english

File:

PDF, 764 KB

english, 2013

23

Molecular Dynamics Simulations of the Catalytic Subunit of Protein Kinase a Reveal New Insight into the Catalytic Process

Tian, Jianhui, Petridis, Loukas, Heller, William T.

Journal:

Biophysical Journal

Year:

2014

Language:

english

File:

PDF, 42 KB

english, 2014

24

Simulation Analysis of the Temperature Dependence of Lignin Structure and Dynamics

Petridis, Loukas, Schulz, Roland, Smith, Jeremy C.

Journal:

Journal of the American Chemical Society

Year:

2011

Language:

english

File:

PDF, 2.64 MB

english, 2011

25

Solvent-Driven Preferential Association of Lignin with Regions of Crystalline Cellulose in Molecular Dynamics Simulation

Lindner, Benjamin, Petridis, Loukas, Schulz, Roland, Smith, Jeremy C.

Journal:

Biomacromolecules

Year:

2013

Language:

english

File:

PDF, 4.60 MB

english, 2013

26

Hydration Control of the Mechanical and Dynamical Properties of Cellulose

Petridis, Loukas, O’Neill, Hugh M., Johnsen, Mariah, Fan, Bingxin, Schulz, Roland, Mamontov, Eugene, Maranas, Janna, Langan, Paul, Smith, Jeremy C.

Journal:

Biomacromolecules

Year:

2014

Language:

english

File:

PDF, 2.39 MB

english, 2014

27

Neutron Technologies for Bioenergy Research

Langan, Paul, Evans, Barbara R., Foston, Marcus, Heller, William T., O'Neill, Hugh, Petridis, Loukas, Pingali, Sai Venkatesh, Ragauskas, Arthur J., Smith, Jeremy C., Urban, Volker S., Davison, Brian H

Journal:

Industrial Biotechnology

Year:

2012

Language:

english

File:

PDF, 308 KB

english, 2012

28

Determination of cellulose crystallinity from powder diffraction diagrams

Lindner, Benjamin, Petridis, Loukas, Langan, Paul, Smith, Jeremy C.

Journal:

Year:

2015

Language:

english

File:

PDF, 639 KB

english, 2015

29

Biomolecular Structure and Dynamics with Neutrons: The View from Simulation

Hong, Liang, Petridis, Loukas, Smith, Jeremy C.

Journal:

Israel Journal of Chemistry

Year:

2014

Language:

english

File:

PDF, 1002 KB

english, 2014

30

Self-similar multiscale structure of lignin revealed by neutron scattering and molecular dynamics simulation

Petridis, Loukas, Pingali, Sai Venkatesh, Urban, Volker, Heller, William T., O’Neill, Hugh M., Foston, Marcus, Ragauskas, Arthur, Smith, Jeremy C.

Journal:

Physical Review E

Year:

2011

Language:

english

File:

PDF, 372 KB

english, 2011

31

The Role of Histone Tails in the Nucleosome: A Computational Study

Erler, Jochen, Zhang, Ruihan, Petridis, Loukas, Cheng, Xiaolin, Smith, Jeremy C., Langowski, Jörg

Journal:

Biophysical Journal

Year:

2014

Language:

english

File:

PDF, 3.20 MB

english, 2014

32

Publisher’s Note: Self-similar multiscale structure of lignin revealed by neutron scattering and molecular dynamics simulation [Phys. Rev. E 83 , 061911 (2011)]

Petridis, Loukas, Pingali, Sai Venkatesh, Urban, Volker, Heller, William T., O’Neill, Hugh M., Foston, Marcus, Ragauskas, Arthur, Smith, Jeremy C.

Journal:

Physical Review E

Year:

2011

File:

PDF, 24 KB

2011

33

Cosolvent Pretreatment in Cellulosic Biofuel Production: Effect of Tetrahydrofuran-Water on Lignin Structure and Dynamics

Smith, Micholas Dean, Mostofian, Barmak, Cheng, Xiaolin, Petridis, Loukas, Cai, Charles M, Wyman, Charles, Smith, Jeremy C

Journal:

Green Chemistry

Year:

2015

Language:

english

File:

PDF, 1.82 MB

english, 2015

34

Enhanced sampling simulation analysis of the structure of lignin in the THF–water miscibility gap

Smith, Micholas Dean, Petridis, Loukas, Cheng, Xiaolin, Mostofian, Barmak, Smith, Jeremy C.

Journal:

Physical Chemistry Chemical Physics

Year:

2016

Language:

english

File:

PDF, 2.34 MB

english, 2016

35

Structural Studies of Plant CESA Support Eighteen CESAs in the Plant CSC

Vandavasi, Venu G., Putnam, Daniel K., Zhang, Qiu, Petridis, Loukas, Heller, William T., Nixon, B. Tracy, Haigler, Candace H., Kalluri, Udaya, Coates, Leighton, Langan, Paul, Smith, Jeremy C., Meiler,

Journal:

Biophysical Journal

Year:

2016

Language:

english

File:

PDF, 42 KB

english, 2016

36

Conformations of Low-Molecular-Weight Lignin Polymers in Water

Petridis, Loukas, Smith, Jeremy C.

Journal:

Year:

2016

Language:

english

File:

PDF, 955 KB

english, 2016

37

Relative Binding Affinities of Monolignols to Horseradish Peroxidase

Sangha, Amandeep K., Petridis, Loukas, Cheng, Xiaolin, Smith, Jeremy C.

Journal:

Journal of Physical Chemistry B

Year:

2016

Language:

english

File:

PDF, 7.46 MB

english, 2016

38

Local Phase Separation of Co-solvents Enhances Pretreatment of Biomass for Bioenergy Applications

Mostofian, Barmak, Cai, Charles M., Smith, Micholas Dean, Petridis, Loukas, Cheng, Xiaolin, Wyman, Charles E., Smith, Jeremy C.

Journal:

Journal of the American Chemical Society

Year:

2016

Language:

english

File:

PDF, 7.56 MB

english, 2016

39

Dynamics at a Peptide–TiO 2 Anatase (101) Interface

Polimeni, Marco, Petridis, Loukas, Smith, Jeremy C., Arcangeli, Caterina

Journal:

Journal of Physical Chemistry B

Year:

2017

Language:

english

File:

PDF, 1.72 MB

english, 2017

40

Dynamics of water bound to crystalline cellulose

O’Neill, Hugh, Pingali, Sai Venkatesh, Petridis, Loukas, He, Junhong, Mamontov, Eugene, Hong, Liang, Urban, Volker, Evans, Barbara, Langan, Paul, Smith, Jeremy C., Davison, Brian H.

Journal:

Scientific Reports

Year:

2017

Language:

english

File:

PDF, 2.90 MB

english, 2017

41

Organosolv-Water Cosolvent Phase Separation on Cellulose and its Influence on the Physical Deconstruction of Cellulose: A Molecular Dynamics Analysis

Smith, Micholas Dean, Cheng, Xiaolin, Petridis, Loukas, Mostofian, Barmak, Smith, Jeremy C.

Journal:

Scientific Reports

Year:

2017

Language:

english

File:

PDF, 2.49 MB

english, 2017

42

Structural factors affecting 13C NMR chemical shifts of cellulose: a computational study

Yang, Hui, Wang, Tuo, Oehme, Daniel, Petridis, Loukas, Hong, Mei, Kubicki, James D.

Journal:

Year:

2017

Language:

english

File:

PDF, 1.26 MB

english, 2017

43

Dynamics of the lignin glass transition

Vural, Derya, Smith, Jeremy C., Petridis, Loukas

Journal:

Physical Chemistry Chemical Physics

Year:

2018

Language:

english

File:

PDF, 7.58 MB

english, 2018

44

Investigation of Carbohydrate Recognition via Computer Simulation

Johnson, Quentin, Lindsay, Richard, Petridis, Loukas, Shen, Tongye

Journal:

Year:

2015

Language:

english

File:

PDF, 1.06 MB

english, 2015

45

An atomistic molecular dynamics study of titanium dioxide adhesion to lipid bilayers

Aranha, Michelle, Mukherjee, Dibyendu, Petridis, Loukas, Khomami, Bamin

Journal:

Year:

2020

Language:

english

File:

PDF, 2.12 MB

english, 2020

46

The relation between lignin sequence and its 3D structure

Rawal, Takat B., Zahran, Mai, Dhital, Brittiny, Akbilgic, Oguz, Petridis, Loukas

Journal:

Biochimica et Biophysica Acta (BBA) - General Subjects

Year:

2020

File:

PDF, 2.27 MB

2020

47

Polymer principles behind solubilizing lignin with organic cosolvents for bioenergy

Vural, Derya, Smith, Jeremy C., Petridis, Loukas

Journal:

Green Chemistry

Year:

2020

File:

PDF, 7.48 MB

2020

48

Mesophilic Pyrophosphatase Function at High Temperature: A Molecular Dynamics Simulation Study

Agarwal, Rupesh, Shrestha, Utsab R., Chu, Xiang-Qiang, Petridis, Loukas, Smith, Jeremy C.

Journal:

Biophysical Journal

Year:

2020

File:

PDF, 683 KB

2020

49

Role of Capping Agents in the Synthesis of Salicylate-Capped Zinc Oxide Nanoparticles

Rawal, Takat Bahadur, Smith, Micholas Dean, Ozcan, Ali, Smith, Jeremy C., Tetard, Laurene, Santra, Swadeshmukul, Petridis, Loukas

Journal:

ACS Applied Nano Materials

Year:

2020

File:

PDF, 1.02 MB

2020